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Symphony: Symmetry-Equivariant Point-Centered Spherical Harmonics for 3D Molecule Generation

Symphony employs higher-degree E(3)-equivariant features in an autoregressive generative model to produce accurate 3D molecular geometries, outperforming existing models.

Year
2023
Venue
arXiv 2023
Authors
4
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arxiv.org/abs/2311.16199v3ARXIV-DEFAULT
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Abstract

We present Symphony, an $E(3)$-equivariant autoregressive generative model for 3D molecular geometries that iteratively builds a molecule from molecular fragments. Existing autoregressive models such as G-SchNet and G-SphereNet for molecules utilize rotationally invariant features to respect the 3D symmetries of molecules. In contrast, Symphony uses message-passing with higher-degree $E(3)$-equivariant features. This allows a novel representation of probability distributions via spherical harmonic signals to efficiently model the 3D geometry of molecules. We show that Symphony is able to accurately generate small molecules from the QM9 dataset, outperforming existing autoregressive models and approaching the performance of diffusion models.

Authors

4